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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4577020_4580049_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4577020 - 4580049

Intron Length:

3030

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAGGTTGC

5'SS Class:

major

3'SS Sequence:

TGTTTTTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTCAT

U12 Branch Point Sequence:

CTTTCCCTATTG

Flanking Amino Acid:

NKEFAEVKNQEVTIKALKEK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.1

64.1

43.4

Major BPS

78.3

0.7

0.8

77.7

26.1

Major PPT

89.4

0.89

0.7

29.8

Minor 5ss

38.7

-1.3

3.1

43.4

44.3

Minor BPS

-0

63.76

44.5

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403