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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4580174_4582140_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4580174 - 4582140

Intron Length:

1967

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

TTTCCCTTTATA

Flanking Amino Acid:

KLQNDFAEKERKLQETQMST

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

0.87

0.8

85.6

Major PPT

85.2

0.79

0.6

80.4

24.9

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

71.1

0.66

1.6

81.07

33.9

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403