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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_461888_462226_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
461888 - 462226
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TTTGCCTTCACA
Flanking Amino Acid:
AFCYQTSAAPIGSDPPTSCC
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
81.9
0.72
0.8
76.1
32.5
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
70.9
0.65
1.8
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012773
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013296
461007 - 462374
1368