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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4626016_4629094_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4626016 - 4629094

Intron Length:

3079

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTGAGAGAA

5'SS Class:

major

3'SS Sequence:

TTTTTCACATCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTTTCACA

Flanking Amino Acid:

ATQIQKAPDVEQAIEVLTRS

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.2

0.69

0.9

69.2

30.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.4

0.68

0.9

80.1

31.8

Minor 5ss

24.4

-2.9

3.1

25.9

38.1

Minor BPS

69.5

0.61

1.7

82.25

33.1

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403