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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4629284_4634491_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4629284 - 4634491

Intron Length:

5208

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCTC

5'SS Class:

major

3'SS Sequence:

CTTTCTTTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTAAA

U12 Branch Point Sequence:

TTTCTTTTAAAG

Flanking Amino Acid:

QLTAKNSTLKQLEEKLKGQA

Intron Amino Acid Position:

233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

70.6

39.9

Major BPS

76.5

0.66

0.8

75.9

24.9

Major PPT

80.4

0.68

81.8

27.5

Minor 5ss

-1.5

3.5

51.2

39.7

Minor BPS

65.1

0.33

1.4

69.62

37.6

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403