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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4634551_4639231_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4634551 - 4639231

Intron Length:

4681

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTGCCTTCCACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TAGAAAATAATT

Flanking Amino Acid:

ADYEEVKKELNILKSMEFAP

Intron Amino Acid Position:

252

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.2

0.9

0.8

88.1

25.2

Major BPS

71.2

0.53

70.3

31.9

Major PPT

73.9

0.54

0.8

32.2

Minor 5ss

40.3

-1.1

3.4

58.5

40.4

Minor BPS

-0.3

61.64

41.5

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403