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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4640392_4641479_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4640392 - 4641479

Intron Length:

1088

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGGTTGA

5'SS Class:

major

3'SS Sequence:

ACCTTCCTTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTATGTTTGACC

Flanking Amino Acid:

TLRITNSDLSGSARRKGKDQ

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.66

67.7

40.2

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

75.5

0.57

0.8

69.8

30.3

Minor 5ss

38.3

-1.3

3.1

46.2

44.4

Minor BPS

62.7

0.38

1.8

74.09

37.1

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403