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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4642152_4643119_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4642152 - 4643119

Intron Length:

968

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTTCAACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

TGTTTTTCAACA

Flanking Amino Acid:

ALRSIQGRQRENPGQNLNRL

Intron Amino Acid Position:

525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

78.8

35.5

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

81.1

0.7

0.9

77.7

35.5

Minor 5ss

-1.2

3.4

56.7

47.6

Minor BPS

0.53

1.5

75.9

35.2

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403