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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4643186_4644544_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4643186 - 4644544

Intron Length:

1359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTCTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAA

U12 Branch Point Sequence:

GTGTCATTAGTT

Flanking Amino Acid:

EVPKRRNGSEGNITTRIRTT

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

72.5

39.1

Major BPS

68.1

0.45

1.3

78.7

34.9

Major PPT

0.92

0.6

89.3

19.4

Minor 5ss

33.4

-1.9

3.1

43.8

43.9

Minor BPS

0.27

1.9

74.09

42.7

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403