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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4644647_4646668_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4644647 - 4646668

Intron Length:

2022

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGGCCT

5'SS Class:

major

3'SS Sequence:

TTGTTTTTCATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTGCAT

U12 Branch Point Sequence:

TTGTTTTTCATA

Flanking Amino Acid:

AKRELQVQKTAEPAQPPSAS

Intron Amino Acid Position:

581

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.3

0.69

67.2

43.9

Major BPS

57.3

0.18

1.6

71.4

45.1

Major PPT

83.2

0.75

0.7

80.1

Minor 5ss

32.3

-2

3.5

48.5

47.2

Minor BPS

57.7

0.24

1.7

69.78

37.7

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403