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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4647496_4648919_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4647496 - 4648919

Intron Length:

1424

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGAAT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTCACTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAC

U12 Branch Point Sequence:

GGTTGCTTCACT

Flanking Amino Acid:

GICQRIFGEKVLGLSQGSVS

Intron Amino Acid Position:

857

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.1

0.78

0.9

81.1

32.6

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

77.8

0.63

0.9

74.5

Minor 5ss

33.3

-1.9

3.3

47.8

47.9

Minor BPS

56.4

0.28

2.2

77.47

44.6

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403