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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4649086_4649723_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4649086 - 4649723

Intron Length:

638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTCTTATCTAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TGTTCCCTGATT

Flanking Amino Acid:

LPAQGQQQGQVLHSVTSLQD

Intron Amino Acid Position:

912

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

85.1

25.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

75.9

0.58

0.8

69.5

35.9

Minor 5ss

35.1

-1.7

2.7

42.4

44.3

Minor BPS

0.65

1.6

84.98

35.2

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002695

4549767 - 4682169

132403