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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4649086_4666542_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4649086 - 4666542

Intron Length:

17457

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTAATTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

CTTTTTTTAATT

Flanking Amino Acid:

LPAQGQQQGQESTPKTSASC

Intron Amino Acid Position:

1028

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

85.1

25.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

87.7

0.85

0.8

82.6

32.6

Minor 5ss

35.1

-1.7

2.7

42.4

44.3

Minor BPS

77.9

0.95

1.1

86.64

33.8

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016