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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4666846_4668321_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4666846 - 4668321
Intron Length:
1476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATCGC
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCCCATGATT
Flanking Amino Acid:
VKEVLTDNNLVWLTSLKSSR
Intron Amino Acid Position:
1032

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
62.2
42.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.6
0.82
0.7
80.9
31.3
Minor 5ss
34.1
-1.8
3
41.5
40.1
Minor BPS
66.8
0.61
1.6
86.03
33.4

Associated Gene:

Gene:
CUX1
Ensembl Gene ID:
ENSAPLG00000002588
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002695
4549767 - 4682169
132403