Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4671462_4676274_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4671462 - 4676274

Intron Length:

4813

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTGG

5'SS Class:

strong_major

3'SS Sequence:

ACTTCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTGAT

U12 Branch Point Sequence:

ATCTGATGCACT

Flanking Amino Acid:

LMDMKRMEKKAYMKRRHSSV

Intron Amino Acid Position:

1116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

1.1

69.7

43.7

Major BPS

82.5

0.81

0.8

71.4

36.6

Major PPT

84.3

0.77

0.8

81.3

Minor 5ss

45.1

-0.5

2.6

58.7

45.8

Minor BPS

41.8

-0.5

2.4

64.25

45.7

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403