Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4676540_4681451_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4676540 - 4681451

Intron Length:

4912

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTGTGTCTCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCACCAT

U12 Branch Point Sequence:

GCAGCCTCACCA

Flanking Amino Acid:

STVINWFHNYRSRIRRELFI

Intron Amino Acid Position:

1204

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.3

34.7

Major BPS

0.08

1.4

42.7

Major PPT

73.5

0.53

0.9

66.1

40.8

Minor 5ss

-2.2

3.6

46.7

48.6

Minor BPS

46.1

-0.3

1.9

53.02

44.9

Associated Gene:

Gene:

CUX1

Ensembl Gene ID:

ENSAPLG00000002588

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046157

4538154 - 4682169

144016

ENSAPLT00000002695

4549767 - 4682169

132403