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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4703083_4703295_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4703083 - 4703295
Intron Length:
213

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCCAAACAA
5'SS Class:
weak_major
3'SS Sequence:
CGCCGGTGCCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GTCTGAA
U12 Branch Point Sequence:
CTTTCCGCAGGT
Flanking Amino Acid:
VSSPTNAPFPEGQVD
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.9
0.16
1.3
47.2
40.7
Major BPS
64.4
0.36
1.2
57.3
41.7
Major PPT
54.9
0.11
1
44.7
41.3
Minor 5ss
17.4
-3.8
3.5
21.8
29.8
Minor BPS
42.7
-0.4
2.5
67.75
48.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028994
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026207
4703066 - 4786578
83513