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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4710078_4710169_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4710078 - 4710169
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
GTCTGCCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
TCCCCCTGAGGT
Flanking Amino Acid:
ESFLLFEGEKKITINKDTKV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1
62.5
43.8
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
64.1
0.32
1
57.6
38.6
Minor 5ss
35
-1.7
2.9
40
40.1
Minor BPS
45.9
-0.2
2
62.08
47.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003744
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003831
4710025 - 4711451
1427