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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4710260_4710584_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4710260 - 4710584
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTGAGCTGA
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
TGCTTGTTCACT
Flanking Amino Acid:
EDHTLGNIIKSQLLKDPQVL
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.8
0.23
1.3
54.7
41.1
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
87.8
0.85
0.6
85.2
22.2
Minor 5ss
39.3
-1.2
3
47
43.4
Minor BPS
48.2
-0
2.4
71.56
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003744
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003831
4710025 - 4711451
1427