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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4712189_4713060_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4712189 - 4713060
Intron Length:
872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTC
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCCTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTACACAAACT
Flanking Amino Acid:
RSDKRIPPTQILKWPELQSN
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
76.2
39.9
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
74.8
0.56
0.8
69.2
31.5
Minor 5ss
37.4
-1.4
3.3
52.4
44.8
Minor BPS
48.7
-0
2.2
79.07
42.4

Associated Gene:

Gene:
LRWD1
Ensembl Gene ID:
ENSAPLG00000003533
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003621
4712048 - 4718872
6825