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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4714617_4714997_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4714617 - 4714997
Intron Length:
381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAA
U12 Branch Point Sequence:
ACAACCTGAATC
Flanking Amino Acid:
NIKLEKEQKNRPFEVTFQFP
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
77.7
30.1
Major BPS
68.5
0.46
1
75.3
29.8
Major PPT
82.1
0.72
0.7
77.4
24.5
Minor 5ss
29.3
-2.4
2.8
35.3
40.9
Minor BPS
55.7
0.16
1.5
59.6
39.2

Associated Gene:

Gene:
LRWD1
Ensembl Gene ID:
ENSAPLG00000003533
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003621
4712048 - 4718872
6825