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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4784990_4786190_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4784990 - 4786190
Intron Length:
1201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CGTTCCTTATTT
Flanking Amino Acid:
TLFLHCLVFLVLYKTAWSES
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
85.3
0.8
0.8
79.9
31.7
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
68.7
0.66
1.6
80.47
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028994
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026207
4703066 - 4786578
83513
ENSAPLT00000021833
4699165 - 4786578
87414