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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4807875_4811066_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4807875 - 4811066
Intron Length:
3192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
GTCTCGCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAC
U12 Branch Point Sequence:
GTGGCCTGACGC
Flanking Amino Acid:
PDKDNTFVLKVENGAEYILE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
33.2
Major BPS
51.1
0.03
1.2
45
39.9
Major PPT
72.4
0.51
0.9
62.1
39.9
Minor 5ss
24.1
-3
3.2
29.7
43.3
Minor BPS
43.3
-0.5
2
51.46
45.5

Associated Gene:

Gene:
SH2B2
Ensembl Gene ID:
ENSAPLG00000028018
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030628
4807574 - 4816728
9155