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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4828109_4836109_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4828109 - 4836109
Intron Length:
8001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTACGTTCT
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCCTTTTGAAGG
Flanking Amino Acid:
PFIAAKRNPLATSPMMSSEL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.26
1.4
63.4
43.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.4
0.71
0.8
73.7
36.9
Minor 5ss
42.7
-0.8
3
54.4
43
Minor BPS
47.4
-0.3
1.8
50.64
44.3

Associated Gene:

Gene:
ORAI2
Ensembl Gene ID:
ENSAPLG00000003488
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003555
4828071 - 4842344
14274