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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4849145_4852765_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4849145 - 4852765
Intron Length:
3621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGACTT
5'SS Class:
major
3'SS Sequence:
TCTTTTCCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TCTTTTCCAACA
Flanking Amino Acid:
KPSQSGRKKQDYGPKVNFKK
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.2
69.3
41.1
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.3
0.7
0.8
77.7
29.6
Minor 5ss
40.3
-1.1
3.1
57.3
46.8
Minor BPS
50.9
0.03
1.9
67.52
39.2

Associated Gene:

Gene:
ALKBH4
Ensembl Gene ID:
ENSAPLG00000003499
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003565
4848503 - 4854030
5528