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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4915270_4915371_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4915270 - 4915371
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCC
5'SS Class:
strong_major
3'SS Sequence:
GTTCGGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CCCTTCCCACCC
Flanking Amino Acid:
LVSKNDFLGKGLRAAGRQEG
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
65.8
40.2
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
66.4
0.37
1
58.6
42.2
Minor 5ss
33.7
-1.9
3
42.6
44.4
Minor BPS
40.5
-0.7
2
45.95
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003804
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003911
4915192 - 4921289
6098