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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4915717_4915912_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4915717 - 4915912
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGGAAC
U12 Branch Point Sequence:
TTAGCTGGAACG
Flanking Amino Acid:
RRLRCTVLEARDLAKKDRNG
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.2
37.4
Major BPS
44.9
-0.3
1.4
50.7
41.5
Major PPT
81
0.7
0.7
76.4
25.6
Minor 5ss
23.1
-3.1
3.2
29
43.5
Minor BPS
45.8
-0.4
2.2
56.66
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003804
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003911
4915192 - 4921289
6098