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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4916198_4916505_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4916198 - 4916505
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGGCA
5'SS Class:
major
3'SS Sequence:
TTGTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCGACAC
U12 Branch Point Sequence:
CCCCCCCCGACA
Flanking Amino Acid:
SIYVMDEDALSRDDVIGKVC
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.9
38.7
Major BPS
43.2
-0.4
1.1
44
37.2
Major PPT
85.6
0.8
0.8
80.6
37
Minor 5ss
28.4
-2.5
3.6
38.8
46.4
Minor BPS
43.6
-0.5
1.9
48.86
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000003804
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003911
4915192 - 4921289
6098