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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4967023_4969569_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4967023 - 4969569
Intron Length:
2547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTACGTAGG
5'SS Class:
major
3'SS Sequence:
TTTCCCCAGTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTGATT
Flanking Amino Acid:
HGAALEEPPDLQSHALLLRS
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
65.8
45.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
66.6
0.37
1
67.2
34.3
Minor 5ss
36.5
-1.5
3
46.3
42.3
Minor BPS
72.6
0.79
1
84.08
30.1

Associated Gene:

Gene:
SRRM3
Ensembl Gene ID:
ENSAPLG00000004545
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034724
4965984 - 4979266
13283