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Intron Name: Anas_platyrhynchos_platyrhynchos_20_4969742_4970037_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4969742 - 4970037

Intron Length:

296

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGAGCA

5'SS Class:

strong_major

3'SS Sequence:

CCGTGCCCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTGAC

U12 Branch Point Sequence:

ACCCCCCTGACT

Flanking Amino Acid:

SDYSNSKSPGRLSPKHREDG

Intron Amino Acid Position:

278

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

68.7

36.4

Major BPS

56.5

0.16

1.1

48.6

36.6

Major PPT

66.2

0.36

0.9

61.7

34.9

Minor 5ss

29.3

-2.4

3.5

46.3

Minor BPS

53.2

0.18

1.7

67.9

42.8

Associated Gene:

Gene:

SRRM3

Ensembl Gene ID:

ENSAPLG00000004545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000034724

4965984 - 4979266

13283

ENSAPLT00000027876

4968225 - 4979266

11042

ENSAPLT00000004667

4966353 - 4979266

12914

ENSAPLT00000043821

4967825 - 4979266

11442

ENSAPLT00000038512

4964750 - 4979266

14517