Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4970143_4970268_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4970143 - 4970268

Intron Length:

126

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCGC

5'SS Class:

strong_major

3'SS Sequence:

GTCCTCCCCGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GGCTCAG

U12 Branch Point Sequence:

TCAGCCTGCCCG

Flanking Amino Acid:

KRKEKNKERKRSRSESPAWR

Intron Amino Acid Position:

243

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

63.9

42.4

Major BPS

45.3

-0.3

1.7

51.1

46.3

Major PPT

0.5

0.8

65.6

30.3

Minor 5ss

25.7

-2.8

3.1

32.8

42.2

Minor BPS

32.9

-1.4

3.5

44.42

47.3

Associated Gene:

Gene:

SRRM3

Ensembl Gene ID:

ENSAPLG00000004545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038512

4964750 - 4979266

14517

ENSAPLT00000034724

4965984 - 4979266

13283

ENSAPLT00000027876

4968225 - 4979266

11042

ENSAPLT00000004667

4966353 - 4979266

12914

ENSAPLT00000043821

4967825 - 4979266

11442