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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4970320_4970560_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4970320 - 4970560
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGCG
5'SS Class:
strong_major
3'SS Sequence:
GCCCTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TGCCTTTTCACC
Flanking Amino Acid:
ESGSRKKRRHRSRSPKNKRK
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
68.6
36.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.2
0.41
0.8
61.3
29.1
Minor 5ss
25.3
-2.8
3.1
30.1
43.1
Minor BPS
49.4
-0
1.7
59.48
40

Associated Gene:

Gene:
SRRM3
Ensembl Gene ID:
ENSAPLG00000004545
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034724
4965984 - 4979266
13283
ENSAPLT00000027876
4968225 - 4979266
11042
ENSAPLT00000004667
4966353 - 4979266
12914
ENSAPLT00000043821
4967825 - 4979266
11442
ENSAPLT00000038512
4964750 - 4979266
14517