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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4970597_4970945_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4970597 - 4970945
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATGG
5'SS Class:
major
3'SS Sequence:
TCTCCATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCCTCTCCATCC
Flanking Amino Acid:
KKTGKKHRRDRSESGSRKKR
Intron Amino Acid Position:
214

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
63.4
43.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
74.5
0.55
0.8
65.8
34.8
Minor 5ss
35.9
-1.6
3.3
47.1
48.3
Minor BPS
43.7
-0.4
2
54.69
43.7

Associated Gene:

Gene:
SRRM3
Ensembl Gene ID:
ENSAPLG00000004545
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034724
4965984 - 4979266
13283
ENSAPLT00000027876
4968225 - 4979266
11042
ENSAPLT00000004667
4966353 - 4979266
12914
ENSAPLT00000043821
4967825 - 4979266
11442
ENSAPLT00000038512
4964750 - 4979266
14517