Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4971841_4972089_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4971841 - 4972089

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTCTGGCCA

5'SS Class:

major

3'SS Sequence:

CTCTTTCCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTCAC

U12 Branch Point Sequence:

CTGTTCTCACCC

Flanking Amino Acid:

YRDDSSHREYRLKRRSSSST

Intron Amino Acid Position:

154

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.36

1.3

55.8

Major BPS

0.87

0.8

85.6

Major PPT

82.1

0.72

0.7

80.6

24.8

Minor 5ss

32.5

-2

3.1

40.1

45.5

Minor BPS

49.6

-0

1.9

61.55

44.2

Associated Gene:

Gene:

SRRM3

Ensembl Gene ID:

ENSAPLG00000004545

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038512

4964750 - 4979266

14517

ENSAPLT00000034724

4965984 - 4979266

13283

ENSAPLT00000027876

4968225 - 4979266

11042

ENSAPLT00000004667

4966353 - 4979266

12914

ENSAPLT00000043821

4967825 - 4979266

11442