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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4976520_4979042_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4976520 - 4979042
Intron Length:
2523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGCCCATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCACAT
U12 Branch Point Sequence:
CTGCCCTGACCA
Flanking Amino Acid:
MELQEMMEEQGYLEEEIRQK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
74.9
35.3
Major BPS
56.3
0.16
1
62.9
34.3
Major PPT
72
0.5
0.9
62.7
38.8
Minor 5ss
29.4
-2.4
3.1
33.3
41.7
Minor BPS
49.8
-0
1.8
61.56
44.3

Associated Gene:

Gene:
SRRM3
Ensembl Gene ID:
ENSAPLG00000004545
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034724
4965984 - 4979266
13283
ENSAPLT00000027876
4968225 - 4979266
11042
ENSAPLT00000004667
4966353 - 4979266
12914
ENSAPLT00000043821
4967825 - 4979266
11442
ENSAPLT00000038512
4964750 - 4979266
14517