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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_497777_498404_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
497777 - 498404
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTGTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
CGTCACTTCACA
Flanking Amino Acid:
VDSAYLRARKSLKQKLEEKV
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86.9
30.1
Major BPS
68.7
0.46
1
71.3
34
Major PPT
78
0.63
0.8
77.2
31.5
Minor 5ss
34.7
-1.7
3.1
49.5
46.7
Minor BPS
49.5
-0
2
62.69
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009876
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010325
496984 - 509780
12797