Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_498581_500328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

498581 - 500328

Intron Length:

1748

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATGTGG

5'SS Class:

major

3'SS Sequence:

GTTTCTTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTGTTTTGCATG

Flanking Amino Acid:

LLGKGRFNVTDLLDTKQKEM

Intron Amino Acid Position:

123

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.5

0.65

63.2

43.6

Major BPS

0.62

1.4

85.7

34.9

Major PPT

89.4

0.89

0.7

84.5

30.4

Minor 5ss

36.2

-1.6

3.2

47.4

Minor BPS

46.1

-0.4

1.9

54.83

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000009876

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010325

496984 - 509780

12797