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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_4998454_4998881_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4998454 - 4998881
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCT
5'SS Class:
major
3'SS Sequence:
TCAACTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TGTTCTAAAAAT
Flanking Amino Acid:
TEVVKAKAGAGSATLSMAYA
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.2
73.5
38.1
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.9
0.58
0.9
68.7
36.9
Minor 5ss
37.8
-1.4
3
51.1
45.4
Minor BPS
49.7
0.06
2
74.97
41.5

Associated Gene:

Gene:
MDH2
Ensembl Gene ID:
ENSAPLG00000004591
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004740
4997003 - 5006522
9520