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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5001036_5001540_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5001036 - 5001540
Intron Length:
505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATGAACG
Flanking Amino Acid:
EAMICIISNPVNSTIPITSE
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1
82.1
37.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
90
0.9
0.7
84.9
29.9
Minor 5ss
45.8
-0.4
2.9
67.6
43.1
Minor BPS
49.7
-0.1
2
62.84
44.3

Associated Gene:

Gene:
MDH2
Ensembl Gene ID:
ENSAPLG00000004591
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004740
4997003 - 5006522
9520