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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5003973_5005818_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5003973 - 5005818
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGTACCCC
5'SS Class:
weak_major
3'SS Sequence:
GTTTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TCTCAGTGCATT
Flanking Amino Acid:
LRRGLATSGPNNAKVAVLGA
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.1
43
38.3
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
86
0.81
0.7
84.9
29.9
Minor 5ss
39.6
-1.2
3
51.6
45.2
Minor BPS
38.2
-0.8
2.4
58.92
44.4

Associated Gene:

Gene:
MDH2
Ensembl Gene ID:
ENSAPLG00000004591
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004740
4997003 - 5006522
9520