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Intron Name: Anas_platyrhynchos_platyrhynchos_20_5008968_5010335_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5008968 - 5010335

Intron Length:

1368

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGACTA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTGAA

U12 Branch Point Sequence:

ATGCTCTGAACT

Flanking Amino Acid:

RTQKILWMPQELDNFQLYPV

Intron Amino Acid Position:

179

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.87

0.8

76.9

33.7

Major BPS

65.6

0.39

0.9

55.4

32.7

Major PPT

86.2

0.81

0.7

80.7

24.5

Minor 5ss

30.1

-2.3

3.1

38.6

46.4

Minor BPS

63.6

0.51

1.4

76.69

39.4

Associated Gene:

Gene:

TMEM120A

Ensembl Gene ID:

ENSAPLG00000005153

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045833

5006103 - 5023024

16922

ENSAPLT00000005221

5006103 - 5016081

9979