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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5011615_5015622_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5011615 - 5015622
Intron Length:
4008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
SSFPTICHFIESLGPRSEMQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.3
0.82
0.8
78
35.4
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045833
5006103 - 5023024
16922
ENSAPLT00000005221
5006103 - 5016081
9979