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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5013484_5015622_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
5013484 - 5015622
Intron Length:
2139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACATCAC
5'SS Class:
major
3'SS Sequence:
TTTCTACTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTTTCTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
65.8
40.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
86.3
0.82
0.8
78
35.4
Minor 5ss
32.8
-2
3.2
43.8
43.9
Minor BPS
52.1
0.15
1.8
77.3
39

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832
ENSAPLT00000005376
5011523 - 5022787
11265