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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5015814_5015880_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5015814 - 5015880
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
CCTTCATCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
AAGCTCTTAACA
Flanking Amino Acid:
RFPVRTTICPLLSCWVKFWS
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.4
0.25
1.4
60.2
46.2
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
76.5
0.6
0.8
74
29.9
Minor 5ss
35.6
-1.6
3
45.9
42.7
Minor BPS
67.7
0.55
1.2
68.33
37.5

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005221
5006103 - 5016081
9979