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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5018092_5018520_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5018092 - 5018520
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
CTTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGCCAG
U12 Branch Point Sequence:
CTTTCCTCCCCA
Flanking Amino Acid:
RLKELSLSLKKCKAHASPEQ
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
63.4
43.8
Major BPS
40.5
-0.6
1.6
47.5
46
Major PPT
81.1
0.7
0.7
73.3
31.6
Minor 5ss
45
-0.5
2.8
55.9
42.9
Minor BPS
40.4
-0.7
3.6
67.11
45.4

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005376
5011523 - 5022787
11265
ENSAPLT00000045833
5006103 - 5023024
16922
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832