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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5020031_5020125_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5020031 - 5020125
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
TGCTGCACCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TGCCCTCTGACA
Flanking Amino Acid:
SFSCRFLLNSRVTDAVFNFL
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
65.2
0.34
0.9
55.1
40.1
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
49.7
-0
1.7
61.44
38.4

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832
ENSAPLT00000005376
5011523 - 5022787
11265
ENSAPLT00000045833
5006103 - 5023024
16922