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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5020216_5020630_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5020216 - 5020630
Intron Length:
415

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCCG
5'SS Class:
major
3'SS Sequence:
GTCTGCCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AACTCCTGACCC
Flanking Amino Acid:
RESILINNGSKIKGWWVFHH
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
65.1
40.7
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
75.9
0.58
0.9
65.6
41
Minor 5ss
30.8
-2.2
2.8
34
34.7
Minor BPS
53.9
0.1
1.8
62.98
42.1

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005376
5011523 - 5022787
11265
ENSAPLT00000045833
5006103 - 5023024
16922
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832