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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5021537_5021940_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5021537 - 5021940
Intron Length:
404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCAG
5'SS Class:
major
3'SS Sequence:
TCATCCTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
CAAACCTTCATC
Flanking Amino Acid:
GERHNMDLTVEGFQSWMWRG
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1.1
59.7
46.7
Major BPS
75
0.62
1.1
77.2
36
Major PPT
79.4
0.66
0.8
73.5
31.2
Minor 5ss
36.8
-1.5
3
39.3
46
Minor BPS
49.7
-0
1.8
57.04
41.6

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045833
5006103 - 5023024
16922
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832
ENSAPLT00000005376
5011523 - 5022787
11265