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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5022006_5022522_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5022006 - 5022522
Intron Length:
517

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CGTGTCTCTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGAAA
U12 Branch Point Sequence:
GAGCCTTGGAAA
Flanking Amino Acid:
FLLPFLFFGQFWQLYNAVTL
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
74.9
35.3
Major BPS
50.3
0.01
1.5
61.7
43.1
Major PPT
76.4
0.59
0.9
69.5
36.8
Minor 5ss
27.6
-2.6
3
32.2
42.5
Minor BPS
44.5
-0.4
1.5
47.33
35.7

Associated Gene:

Gene:
TMEM120A
Ensembl Gene ID:
ENSAPLG00000005153
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045833
5006103 - 5023024
16922
ENSAPLT00000025188
5011523 - 5022926
11404
ENSAPLT00000022369
5011523 - 5032354
20832
ENSAPLT00000005376
5011523 - 5022787
11265