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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_20_5032992_5033808_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5032992 - 5033808
Intron Length:
817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
TTCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
CACCATTTAACG
Flanking Amino Acid:
SSFIEKMKKTGRNIVVFYGS
Intron Amino Acid Position:
74

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
64.4
42.8
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
88.3
0.86
0.7
81.1
31
Minor 5ss
44.7
-0.6
2.9
59.8
45
Minor BPS
49.7
-0.1
1.6
50.69
43.4

Associated Gene:

Gene:
POR
Ensembl Gene ID:
ENSAPLG00000005585
Chromosome:
20

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044244
5023957 - 5037056
13100
ENSAPLT00000005783
5023957 - 5040598
16642